If you find the method useful, please cite the following paper in your work.Īutomatic Generation of Interactive Multidimensional Phase Portraits In addition, notebooks including generated portraits can be opened retaining all the interactive functionality with the freely-available software Wolfram Player. A full version of Wolfram Mathematica is needed to generate new portraits. The zip file includes the package, the graphical user interface (GUI), a tutorial, and a computable notebook with examples. Please, click here to download the latest version of AutoPortrait. You are welcome to use these tutorials in your teaching, but must give credit to the original authors (see copyright notice in the Mathematica notebooks) and follow the rules of the GPL documentation license.You can freely use and download AutoPortrait ( GPLv3 license) in your own computer. Otherwise, you may view (but not execute) these tutorials by using the Wolfram Mathematica Player. Mathematica is a commercial program developed by Wolfram Research, but many universities and research institutes have Mathematica site licenses check with your computer department to see whether you can use a copy. These tutorials require Mathematica 5.0 or higher to run. These tutorials were designed to be used in sequence, but experienced Mathematica users may skip the first tutorial. These tutorials are designed to rapidly familliarize students with Mathematica, dynamical systems theory, and building ordinary differential equation models of cytoplasmic processes and gene networks. These tutorials were developed and used in teaching the research apprenticeship courses taught by the Center for Cell Dynamics.
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